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Lisette Kogelman

Lisette Kogelman

 

Lisette JA Kogelman

Affiliated Research Scientist, Systems Genomics, Danish Headache Center, Glostrup Hospital 

 Linkedin RG

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Full-length research articles in peer-reviewed international journals

  1. Kogelman, L.J.A., D.V Zhernakova, H-J Westra, S. Cirera, M. Fredholm, L. Franke, H.N. Kadarmideen. An integrative systems genetics approach reveals potential causal genes and pathways related to obesity. (submitted).

 

  1. Alexandre, P.A., J.A. Kogelman, M.H.A. Santana, D. Passarelli, L.H. Pulz, L. Silva, P.R. Leme, L.L. Coutinho, J. Bento, J.P. Eler, H.N. Kadarmideen, H. Fukumasu. Liver transcriptome profiles reveal biological functions and regulatory genes associated with feed efficiency in Nellore cattle. (submitted)

 

  1. S. D. Pant, P. Karlskov-Mortensen, M.J. Jacobsen, S. Cirera, L.J.A. Kogelman, C.S. Bruun, T. Mark, C.B. Jørgensen, N. Grarup, E.V.R. Appel, E.A.A. Galjatovic, T. Hansen, O. Pedersen, M. Guerin, T. Huby, P. Lesnik, T.H.E. Meuwissen, H.N. Kadarmideen, M. Fredholm. Comparative Analyses of QTLs influencing Obesity and Metabolic Phenotypes in Pigs and Humans. (submitted)

 

  1. G. Mazzoni, L.J.A. Kogelman, P. Suravajhala, H.N. Kadarmideen. Systems Genetics of complex diseases using RNA-Sequencing methods (2015). International Journal of bioscience, Biochemistry and Bioinformatics.

 

  1. J.A. Kogelman, S. Cirera, D.V. Zhernakova, M. Fredholm, L. Franke, H.N. Kadarmideen. (2014). Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model. BMC Medical Genomics, 7: 57

 

  1. Kogelman, L.J.A., Pant,S.D., Fredholm, M.,Kadarmideen, H.N.  Systems genetics of obesity in an F2 pig model by genome-wide association, genetic network and pathway analyses. Frontiers in Genetics (Systems biology), 5:214. doi: 10.3389/fgene.2014.00214

 

  1. Kogelman, LJA and Kadarmideen, HN. (2014). Weighted Interaction SNP Hub (WISH) network method for building genetic networks for complex diseases using whole genome genotype data. BMC Systems Biology 8(Suppl 2): S5 (http://www.biomedcentral.com/1752-0509/8/S2/S5)

 

  1. Kogelman, L.J.A., H.N. Kadarmideen, T. Mark, P. Karlskov-Mortensen, C. S. Bruun, S. Cirera, M.J. Jacobsen, C.B. Jørgensen and M. Fredholm(2013). An F2 pig resource population as a model for genetic studies of obesity and obesity-related diseases in humans: design and genetic parameters. Frontiers in Genetics 4: Doi:10.3389/fgene.2013.00029

 

  1. Kogelman, L.J.A., Byrne, K., Vuocolo, T., Watson-Haigh, N.S., Kadarmideen, H.N., Kijas, J.W., Oddy, HVH, Gardiner, GE., Gondro, C., and Tellam, RL. Genetic architecture of gene expression in ovine skeletal muscle. BMC Genomics 2011, 12:607

 

Peer reviewed conference papers

  1. Alexandre, P. A., Kogelman, L.J.A., Santana, M. Fantinato Neto P., Ferraz J.B.S., Eler J.P., Kadarmideen, H. N., Fukumasu, H. Liver transcriptomic profile associated with feed efficiency in Nellore cattle. Proceedings of the 21st Conference of the Association for the Advancement of Animal Breeding and Genetics (AAABG), September 2015, Lorne, Australia.

 

  1. Alexandre, P. A., Kogelman, L.J.A., Santana, M. H. A., Eler, J.P., Silva, S. L., Leme, P.R., Coutinho, L.L., Kadarmideen, H. N., Fukumasu, H. (2014). Identificação de vias moleculares associadas à eficiência alimentar em fígado de bovinos Nelore. Proceedings, XXIII Semana Científica Benjamin Eurico Malucelli, 8-10 October 2014, São Paulo, Brazil.

 

  1. J.A. Kogelman, S.D. Pant, J. Karjalainen, L. Franke, M. Fredholm, H.N. Kadarmideen. Systems genetics analysis of obesity in a porcine model using WISH network method. Proceeding 10th World Congress of Genetics Applied to Livestock Production (WCGALP), 16-23 August 2014, Vancouver, British Columbia, Canada. Paper number: 9004

 

  1. J.A. Kogelman, D.V. Zhernakova, H-J. Westra, S. Cirera, M. Fredholm, L. Franke, H.N. Kadarmideen. Systems genetics analysis of obesity using RNA-Seq data in an F2 pig ressource population. Proceeding 10th World Congress of Genetics Applied to Livestock Production (WCGALP), 16-23 August 2014, Vancouver, British Columbia, Canada. Paper number: 8987

 

  1. Kogelman L.J.A. , N.S. Watson-Haigh, H.N. Kadarmideen, J.W. Kijas, T. Vuocolo, K. Byrne, H. Oddy, G.E. Gardner, Cedric Gondro and R.L. Tellam. (2011). Functional genomics of estimated breeding value for eye muscle depth in sheep. Proceedings of the 18th Conference of the Association for the Advancement of Animal Breeding and Genetics (AAABG), July 2011, Perth, Australia (P15).

 

List of abstracts/short paper

  1. J.A. Kogelman, D. Trabzuni, M.J. Bonder, L. Franke, P.C. Thomson, H. N. Kadarmideen. Differential expression among tissues in morbidly obese individuals using a finite mixture model under BLUP. Proceedings of the 14th European Conference on Computational Biology and 23rd Annual International Conference on Intelligent Systems for Molecular Biology, July 10-14 2015, Dublin, Ireland.

 

  1. Alexandre, P. A., Kogelman, L. J. A., Santana, M. H. A., Eler, J.P., Kadarmideen, H. N., Fukumasu, H. (2014). System biology approach to detect and assign biological functions and regulator genes to feed efficiency traits in Nellore cattle. Proceedings of International Society for Computational Biology Latin America X-Meeting on Bioinformatics. October 28 – 30, 2014 – Belo Horizonte, Brazil.

 

  1. J.A. Kogelman, D.V. Zhernakova, H-J. Westra, S. Cirera, M. Fredholm, L. Franke, H.N. Kadarmideen. Systems genetics analysis of RNA-Seq data to unravel the genetics of obesity using a porcine model. Proceedings of the Annual meeting of the European Federation of Animal Science, Copenhagen, Denmark, 25-29 August 2014.

 

  1. J.A. Kogelman, S.D. Pant, J. Karjalainen, L. Franke, M. Fredholm, H.N. Kadarmideen. The WISH network method applied to obesity in an F2 pig population. Proceedings of the Annual meeting of the European Federation of Animal Science, Copenhagen, Denmark, 25-29 August 2014.

 

  1. Frederiksen,S.D., S.D. Pant, L.J.A. Kogelman, M. Fredholm, H. N. Kadarmideen. 2014. Quantitative and Systems Genetics Analyses of Lipid Profiles in a Pig Model for Obesity. Proceedings of the Annual meeting of the European Federation of Animal Science, Copenhagen, Denmark, 25-29 August 2014. Abstract no.: 19049.

 

  1. Mantas, P., Kogelman, L.J.A., Cirera, S., Fredholm, M., Kadarmideen, H.N. 2014. Systems biology and RNA-Seq analyses to detect biomarkers for metabolic syndrome in a porcine model. Proceedings of the Annual meeting of the European Federation of Animal Science, Copenhagen, Denmark, 25-29 August 2014. Abstract no.: 19050

 

  1. Kogelman, LJA, M. Fredholm, and H.N. Kadarmideen (2013). A systems genetics analysis of obesity using the Weighted Interaction SNP Hub (WISH) network method. Proceedings of the 14th International Conference on Systems Biology, Copenhagen, 30 August – 3 September 2013

 

  1. Kogelman, L. J. A. and H.N. Kadarmideen. 2013. The Weighted Interaction SNP Hub (WISH) network method for systems genetics analyses. Annual meeting of the European Federation of Animal Science, Nantes, 26-30 August 2013

 

  1. J.A. Kogelman, D.V. Zhernakova, H-J. Westra, S. Cirera, M. Fredholm, L. Franke, H.N. Kadarmideen. Systems genetics approaches to integrate genomic and transcriptomics data in a porcine model for human obesity. PhD Day SUND, University of Copenhagen, May 2014, Copenhagen, Denmark

 

  1. J.A. Kogelman, M. Fredholm, H.N. Kadarmideen. A systems genetics analysis of obesity using the Weighted Interaction SNP Hub (WISH) network method. 7th Annual International SHARE Symposium, Nov 2013, Copenhagen, Denmark

 

  1. Kogelman, L. J. A. and H.N. Kadarmideen. 2013. Weighted Interaction SNP Hub (WISH) network method for building genetic networks using high-throughput genotype data. Proceedings of the Genomics in Metabolism Conference, Nov 3-6, Helsingor, Denmark

 

  1. Kogelman L.J.A., Zhernakova, H-J. Westra, S. Cirera, M. Fredholm, L. Franke, H.N.Kadarmideen. Systems genetics analysis of obesity using RNA-Seq data. Proceedings of the Genomics in Metabolism Conference, Nov 3-6, Helsingor, Denmark

 

  1. Kadarmideen, HN., Pant,SD., Karlskov-Mortensen, P., Kogelman, LJA., Cirera, S., Jacobsen, MJ., Bruun,CS., Mark, T., Jørgensen, CB., Meuwissen THE., and Fredholm. M. 2013. The pig as a model for studies of genomics of obesity and obesity related metabolic diseases. Proceedings of the Genomics in Metabolism Conference, Nov 3-6, Helsingor, Denmark

 

  1. Kogelman L.J.A, S. Horvath, M. Fredholm and H.N. Kadarmideen. 2013. The Weighted Interaction SNP Hub (WISH) Network for systems genetics analysis of obesity. PhD Day SUND, University of Copenhagen, May 2013, Copenhagen, Denmark

 

  1. Kogelman, L. J. A., S. Pant, S. Horvath, M. Fredholm, H. N. Kadarmideen. 2013. Pathway profiling of obesity using the weighted interaction SNP hub (WISH) network method. The Joint Human Genetics Meeting 2013 and the 21st International Congress of Genetics, Singapore, 13-18 April, 2013

 

  1. Jacobsen, M., CM Junker, LJA Kogelman, T Mark, P Karlskov-Mortensen, CS Bruun, S Cirera, J Gorodkin, HN Kadarmideen, R Barres, CB Jørgensen and M Fredholm. 2013. Global Analysis of Genetic and Epigenetic differences associated with obesity. Proceedings of the Keystone Symposia on “Adipose tissue Biology and Diabetes”, Keystone Resort, Keystone, Colorado, USA, January 27—Feb 1, 2013

 

  1. Kogelman, LJA, Kadarmideen, H.N., Mark, T, Karlskov-Mortensen, P., Bruun, C.S., Cirera, S., Jacobsen, M.J., Jørgensen, C.B. and Fredholm, M. 2012.An F2 pig resource population as a model for genetic studies of obesity and obesity-related diseases in humans: Design and genetic parameters. Symposium SHARE – Synergy in Human and Animal Research, Nov 2012, Copenhagen, Denmark.

 

  1. Kogelman, L.J.A, Kadarmideen, H.N., Mark, T, Karlskov-Mortensen, P., Bruun, C.S., Cirera, S., Jacobsen, M.J., Jørgensen, C.B. and Fredholm, M. 2012. An F2 pig resource population as a model for genetic studies of obesity and obesity-related diseases in humans: Design and genetic parameters. UNIK Symposium, Nov 2012, Copenhagen, Denmark.

 

  1. Kogelman, L.J.A., Mark, T. Karlskov-Mortensen, P., Bruun, CS., Cirera, S., Jørgensen, C.B., Fredholm, M., and Kadarmideen, H.N. 2012. Genetic parameters for fatness-related traits in pigs: animal model for human obesity. The 4th International Conference of Quantitative Genetics: Understanding Variation in Complex Traits, 17 – 22 Jun 2012, Edinburgh, UK, P0344