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Journal Articles

Updated: April 2016

Peer-Reviewed Journal Articles

 

  1. Gianluca Mazzoni and Haja N. Kadarmideen (2016). Computational Methods for Quality Check, Preprocessing and Normalization of RNA-Seq Data for Systems Biology and Analysis. Pages 61-77. In:  Systems Biology in Animal Production and Health, Vol. 2, H.N. Kadarmideen (ed.) DOI 10.1007/978-3-319-43332-5_3. Book Published by Springer International Publishing, Switzerland. http://link.springer.com/book/10.1007/978-3-319-43332-5. Print ISBN: 978-3-319-43330-1 and Online ISBN: 978-3-319-43332-5
  2. Lisette J. A. Kogelman and Haja N. Kadarmideen (2016). Applications of Systems Genetics and Biology for Obesity Using Pig Models. Pages 25-42. In: Systems Biology in Animal Production and Health, Vol. 1, H.N. Kadarmideen (ed.). DOI 10.1007/978-3-319-43335-6_2. Book Published by Springer International Publishing, Switzerland. http://link.springer.com/book/10.1007/978-3-319-43335-6. Print ISBN: 978-3-319-43333-2 and Online ISBN: 978-3-319-43335-6
  3. Haja N. Kadarmideen (2016). Systems Biology in Animal Production and Health, Vol. 1. Book Published by Springer International Publishing, Switzerland. 164 pages. DOI: 10.1007/978-3-319-43335-6. http://link.springer.com/book/10.1007/978-3-319-43335-6. Print ISBN: 978-3-319-43333-2 and Online ISBN: 978-3-319-43335-6
  4. Haja N. Kadarmideen (2016). Systems Biology in Animal Production and Health, Vol. 2. Book Published by Springer International Publishing, Switzerland. 167 pages. DOI: 10.1007/978-3-319-43332-5. http://link.springer.com/book/10.1007/978-3-319-43332-5. Print ISBN: 978-3-319-43330-1 and Online ISBN: 978-3-319-43332-5
  5. Santana MH, Freua MC, Do DN, Ventura RV, Kadarmideen HN, Ferraz JB. 2016. Systems genetics and genome-wide association approaches for analysis of feed intake, feed efficiency, and performance in beef cattle. Genet Mol Res. 15(4). doi: 10.4238/gmr15048930.
  6. Kogelman, LJA., Jingyuan Fu, Franke,L., Greve, JW., Hofker, M., Rensen, SS and Kadarmideen, HN. 2016. Inter-tissue gene co-expression networks between metabolically healthy and unhealthy obese individuals. PLoS ONE 11(12): e0167519. doi:10.1371/journal.pone.0167519
  7. E. Razza , H. Pedersen, L. Stroebech , M. Machado , M. Nogueira, H. N. Kadarmideen, H. Callesen and P. Hyttel. (2015). Prematuration of bovine cumulus-oocyte complexes with cyclic adenosine monophosphate modulators affects both oocyte and blastocyst ultrastructure. Reproduction, Fertility and Development 28(2) 227-227. http://dx.doi.org/10.1071/RDv28n2Ab192
  8. Horikoshi, M., Beaumont, RN., Day, FR., Warrington, NM., Kooijman, MN., Fernandez-Tajes, J., van Zuydam, NR., et al., (2016). Genetic studies of birth weight give biological insights into links with adult disease. Nature (doi:10.1038/nature19806). Nature 538, 248–252. Access to full article and supplements (view only, if you do not have subscription): http://rdcu.be/kB9e
  9. Pareek, CS., Smoczynski, R., Kadarmideen, HN., Dziuba, P., Blaszczyk, P., et al. 2016. Single nucleotide polymorphism discovery in bovine pituitary gland using RNA-seq technology. PLoS One 11(9): e0161370. doi:10.1371/journal.pone.0161370).
  10. Madsen, M.B., Kogelman, L.J.A., Kadarmideen, H.N., Rasmussen, H.B., (2016). Systems genetics analysis of pharmacogenomics variation during antidepressant treatment period. The Pharmacogenomics Journal, doi:10.1038/tpj.2016.68
  11. Freude,KK., Jan O. Secher, Ahmet Ceylan, Kaveh Mashayekhi, Tong Li, Suchitra Poligari, Gianluca Mazzoni, Troels Tolstrup Nielsen, Shengting Liu, Stoyan Petkov, Yonglun Luou, Dong Li, Lori Thomps, Haja N. Kadarmideen, Andras Dinnyes, Lars Bolund, Henrik Callesen & Poul Hyttel (2016). Naïve versus primed porcine induced pluripotent stem cells – deciphering stemness in a challenging species. Molecular Reproduction and Development (accepted)
  12. Suravajhala, P., Kogelman, LJA., and Kadarmideen, HN. 2016. Multi-omic data integration and analysis using systems genomics approaches: Methods and application in animal production, health and welfare. Genetics Selection Evolution 48:38. DOI 10.1186/s12711-016-0217-x
  13. de Almeida Santana, MH., Junior GA., Cesar, AS., Freu, MC., da Costa Gomes, R., da Luz E Silva, S., Leme, PR., Fukumasu, H., Carvalho, ME., Ventura, RV., Coutinho, LL., Kadarmideen, HN., Ferraz, JB. 2016. Copy number variations and genome-wide associations reveal putative genes and metabolic pathways involved with feed conversion ratio in beef cattle. Journal of Applied Genetics.  DOI 10.1007/s13353-016-0344-7
  14. Felix, JF., Bradfield, JP., Grant, SF., Jaddoe, VWV., and the Early Growth Genetics Consortium (2015). Genome-wide association meta-analysis identifies three new childhood body mass index susceptibility loci. Human Molecular Genetics, 25 (2): 389-403   DOI:10.1093/hmg/ddv472
  15. Kogelman, LJA., Zhernakova, DV., Westra, HJ., Cirera, S., Fredholm, M., Franke, L., Kadarmideen, HN (2015). An integrative systems genetics approach reveals potential causal genes and pathways related to obesity. Genome Medicine 7: 105. DOI: 10.1186/s13073-015-0229-0
  16. Pant, S.D., Karlskov-Mortensen, P., Jacobsen, M.J., Cirera, S., Kogelman, L.J.A., Bruun, C.S., Mark, T., Jørgensen, C.B., Grarup, N., Appel, E.V.R., Galjatovic, E.A.A., Hansen, T., Pedersen, O.B.,   Guerin, M., Huby, T., Lesnik, P., Meuwissen, T.H.E., Kadarmideen, H.N. and Fredholm, M. (2015). Comparative Analyses of QTLs influencing Obesity and Metabolic Phenotypes in Pigs and Humans. PLoS One 10(9): e0137356. doi:10.1371/journal.pone.0137356
  17. Kadarmideen, HN., Mazzoni,G., Watanabe,YF., Strøbech,L., Baruselli,PS., Meirelles,FV., Callesen,H., Hyttel,P., Ferraz, JBS., and Nogueira, MFG. 2015. Genomic Selection of In vitro Produced and Somatic Cell Nuclear Transfer Embryos for Rapid Genetic Improvement in Cattle Production. Animal Reproduction 12 (3): 389-396
  18. Stroebech, L., Mazzoni, G., Pedersen, HS., Freude, KK., Kadarmideen, HN., Callesen, H., and Hyttel, P. (2015). In vitro production of bovine embryos – Revisiting oocyte development and application of systems biology. Animal Reproduction 12 (3): 465-472
  19. Suravajhala,P., Kogelman L.J.A., Mazzoni G and Kadarmideen H.N. (2015). Potential role of lncRNA cyp2c91-protein interactions on diseases of the immune system. Frontiers in Genetics (Systems Biology) 6: 255 DOI:10.3389/fgene.2015.00255
  20. Alexandre, PA., L.J.A. Kogelman, M.H.A. Santana, J.P. Eler, Kadarmideen, H.N. and H. Fukumasu. 2015. System biology approach to detect and assign biological functions and regulator genes to feed efficiency traits in Nellore cattle. BMC Genomics 16: 1073 , DOI: http://dx.doi.org/10.1186/s12864-015-2292-8
  21. Mazzoni,G., Kogelman, LJA., Suravajhala, PN., Kadarmideen, HN. (2015). Systems genomics using next-generation sequencing methods. International Journal of Bioscience, Biochemistry and Bioinformatics 5(4): 266-279. doi: 10.17706/ijbbb.2015.5.4.264-279.
  22. Do DN, Janss, LLG., Jensen, J., and Kadarmideen HN (2015). SNP annotation-based whole genomic prediction and selection: An application to feed efficiency and its component traits in pigs. Journal of Animal Science. 93 (5): 2056-2063. DOI: http://dx.doi.org/10.2527/jas.2014-8640
  23. Ali,AA., Khatkar, MS., Kadarmideen, HN., Thomson, PC. (2015). Additive and epistatic genome-wide association for growth and ultrasound scan measures of carcass-related traits in Brahman cattle. Journal of Animal Breeding and Genetics 132: 187–197.
  24. Khanal P, Axel AM, Kongsted AH, Husted SV, Johnsen L, Pandey D, Pedersen KL, Birtwistle M, Markussen B, Kadarmideen HN, Nielsen MO.2014. Late gestation under- and overnutrition have differential impacts when combined with a postnatal obesogenic diet on glucose-lactate-insulin adaptations during metabolic challenges in adolescent sheep. Acta Phyologica 213(2):519-536. doi: 10.1111/apha.12391
  25. Do DN, Strathe AB, Ostersen T, Pant SD and Kadarmideen HN (2014) Genome-wide association and pathway analysis of feed efficiency in pigs reveal candidate genes and pathways for residual feed intake. Frontiers in Genetics (Livestock Genomics). 5:307. doi: 10.3389/fgene.2014.00307
  26. Kogelman, L.J.A., S. Cirera, D.V. Zhernakova, M. Fredholm, L. Franke, N. Kadarmideen. 2014. Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model. BMC Medical Genomics 7: 57. http://www.biomedcentral.com/1755-8794/7/57. doi:10.1186/1755-8794-7-57. 16 pp.
  27. Kogelman, L.J. A., Pant, S.D., Fredholm, M., Kadarmideen, H.N. 2014. Systems genetics of obesity in an F2 pig model by genome-wide association, genetic network and pathway analyses. Frontiers in Genetics (Systems Biology), 5:214. doi: 10.3389/fgene.2014.00214. 15 pp.
  28. Kogelman, LJA and Kadarmideen, HN. (2014). Weighted Interaction SNP Hub (WISH) network method for building genetic networks for complex diseases using whole genome genotype data. BMC Systems Biology 8 (Suppl 2): S5 (http://www.biomedcentral.com/1752-0509/8/S2/S5). 12 pp.
  29. Kadarmideen, HN. (2014). Genomics to Systems Biology in Animal and Veterinary Sciences: Progress, Lessons and Opportunities. Livestock Science, 166: 232-248. http://dx.doi.org/10.1016/j.livsci.2014.04.028
  30. Duy DN., Ostersen,T., Strathe, A.B., Mark., T., J. Jensen., and Kadarmideen, HN. (2014). Genome-wide associations and systems genetic analyses for residual feed intake, daily feed consumption, backfat and weight gain in pigs. BMC Genetics 15:27 (http://www.biomedcentral.com/1471-2156/15/27) 15 pp.
  31. Strathe, A. B., Velander, I. H., Mark, T., Ostersen, T., Hansen, C. and Kadarmideen, H.N. (2013). Genetic Parameters for male fertility and its relationship to Skatole and Androstenone in Danish Landrace Boars. Journal of Animal Science 91(10):4659-4668
  32. Lan,PD., Duy, DN., Nam,LQ., Ba,NV., Minh,LTA., Hoan,TX., Cuong, VC., and N. Kadarmideen (2013). Molecular genetic diversity and genetic structure of Vietnamese indigenous pig populations. Journal of Animal Breeding and Genetics. 131: 379–386 http://dx.doi.org/10.1111/jbg.12068 http://dx.doi.org/10.1111/jbg.12068
  33. Duy, DN., Strathe, AB., Ostersen, T., Jensen, J., Mark, T., and Kadarmideen, HN. (2013). Genome-wide association study reveals genetic architecture of eating behavior in pigs and its implications for human obesity by comparative mapping. PLoS ONE 8(8): e71509. doi:10.1371/journal.pone.0071509. 14 pp.
  34. Cirera,S., Jensen, MS, Elbrønd, VS., Moesgaard, SG., Christoffersen, BO., Kadarmideen, HN., Skovgaard,K., Bruun, CV., Karlskov-Mortensen, P., Jørgensen, CB and Fredholm, M. (2013). Expression studies of six human obesity-related genes in seven tissues from divergent pig breeds. Animal Genetics 45: 59–66. DOI: 10.1111/age.12082
  35. Hou,L., A. H. Kongsted, S. M. Ghoreishi, T. K. Takhtsabzy, M. Friedrichsen, L. I. Hellgren, N. Kadarmideen, A. Vaag and M. O. Nielsen (2013). Pre- and early-postnatal nutrition modify gene and protein expressions of muscle energy metabolism markers and phospholipid fatty acid composition in a muscle type specific manner in sheep. PLoS ONE 8(6): e65452. doi:10.1371/journal.pone.0065452, 16 pp.
  36. Strathe, A. B., Velander, I. H., Mark, T., and Kadarmideen, H.N. (2013). Genetic Parameters for Androstenone and Skatole as indicators of Boar Taint and their relationship to Production and Litter Size Traits in Danish Landrace. Journal of Animal Science 91:2587-2595, doi:10.2527/jas2012-6107
  37. Duy DN, Strathe, AB., Jensen, J., Mark,T., Kadarmideen, HN. (2013). Genetic parameters for different measures of feed efficiency and related traits in boars of three pig breeds. Journal of Animal Science 91, 4069-79.
  38. Lan,PD., Duy, DN., Binh, NT., Nam,LQ., Ba,NV., Thuy,TTT., Hoan,TX., Cuong, VC., and N. Kadarmideen (2013). Assessment of genetic diversity and population structure of Vietnamese indigenous cattle populations by microsatellites. Livestock Science 155 (1): 17-22.
  39. McDowall, ML, NS Watson Haigh, NM Edwards, HN Kadarmideen, GS Natrass, HA McGrice and PI Hynd (2013). Transient Treatment of Pregnant Merino Ewes with Modulators of Cortisol Biosynthesis Coinciding with Primary Wool Follicle Initiation Alters Lifetime Wool Growth. Animal Production Science. 53(10) 1101-1111.
  40. Kogelman, LJA.,N. Kadarmideen, T. Mark, P. Karlskov-Mortensen, C. S. Bruun, S. Cirera, M.J. Jacobsen, C.B. Jørgensen and M. Fredholm (2013). An F2 pig resource population as a model for genetic studies of obesity and obesity-related diseases in humans: design and genetic parameters. Frontiers in Genetics 4:29. doi: 10.3389/fgene.2013.00029, 14 pp.
  41. Ali, A.A., P. C. Thomson and Kadarmideen, H.N. (2013). Association between microsatellite markers and bovine tuberculosis in Chadian Zebu cattle. Open Journal of Animal Sciences 3 (1): 27-35.
  42. Mogensen,MS Scheibye-Alsing,K., Karlskov-Mortensen,P., Proschowsky,HF., Jensen, VF., Bak,M., Tommerup, N., Kadarmideen, HN and Fredholm, M. (2012). Validation of genome-wide intervertebral disk calcification associations in dachshund and further investigation of the chromosome 12 susceptibility locus. Frontiers in Genetics 3: 225. doi: 10.3389/fgene.2012.00225, 16 pp.
  43. Kadarmideen, H.N. and Watson Haigh, N.S. (2012). Building gene co-expression networks using transcriptomics data for systems biology investigations: Comparison of methods using microarray data. Bioinformation 8 (18): 855-861.
  44. Ali, A.A., O’Neill, C., Thomson, P.C., and Kadarmideen, H.N. (2012). Genetic parameters of infectious bovine keratoconjunctivitis and its relationship with weight and parasite infestations in Australian tropical Bos taurus cattle. Genetics, Selection, Evolution 44: 22 doi:10.1186/1297-9686-44-22, 10 pp.
  45. Karacaören, B., Janss, L.L.G., and Kadarmideen, H.N. (2012). Predicting breeding values in animals by kalman filter: application to body condition scores in dairy cattle. Kafkas Univ Vet Fak Derg.18 (4): 627-632.
  46. Watson-Haigh NS, O’Neill, C., and Kadarmideen H.N. (2012). Proximity loggers: data handling and classification for quality control. IEEE Sensors 12 (5): 1611 – 1617.
  47. Kogelman, LJA., Byrne, K., Vuocolo, T., Watson-Haigh, N.S., Kadarmideen, H.N., Kijas, J.W., Oddy, HVH., Gardiner, GE., Gondro, C., and Tellam, RL. (2011). Genetic architecture of gene expression in ovine skeletal muscle. BMC Genomics 12:607, 17 pp.
  48. Kadarmideen, H.N., Ali, A.A., P. C. Thomson, B. Muller and J. Zinsstag (2011). Polymorphisms of the SLC11A1 Gene and Resistance to Bovine Tuberculosis in African Zebu Cattle. Animal Genetics 42:656-658.
  49. Kadarmideen H.N., Watson-Haigh NS, Andronicos, N.M. (2011). Systems biology of ovine intestinal parasite resistance: disease gene modules and biomarkers. Molecular BioSystems 7, 235–246
  50. O’Neill, C., Swain, D.L. and Kadarmideen, H.N. (2010). Evolutionary process of Bos taurus cattle in favourable versus unfavourable environments and its implications for genetic selection. Evolutionary Applications 3:422-433.
  51. Goodswen, S.J., Gondro, C., Watson-Haigh, N.S., and Kadarmideen, H.N. (2010). FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases. BMC Bioinformatics 11: Art.311, 9 pp.
  52. Watson-Haigh, N.S., Kadarmideen, H.N. and Reverter, A (2010). PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches. Bioinformatics 26: 411-413.
  53. Flury, C., B., N. R. Ngandolo, B. Müller J. Zinsstag and N. Kadarmideen (2009). Molecular characterization of two common Chadian cattle breeds. Animal Genetic Resources Information 44: Art. No. 67 (ISBN-13 / EAN: 9789250062693)
  54. Kadarmideen H.N. (2008). Genetical systems biology in livestock: application to gonadotrophin releasing hormone and reproduction. IET Systems Biology 2: 423-441
  55. Karacaören, B., Kadarmideen, H.N. (2008). Principal Component and Clustering Analysis of Functional Traits in Swiss Dairy Cattle. Turkish Journal of Veterinary and Animal Sciences 32: 163-17
  56. Li, Y., N. Kadarmideen and J.C.M. Dekkers (2008). Selection on multiple QTL with control of gene diversity and inbreeding for long-term benefit. Journal of Animal Breeding Genetics 125: 320-329
  57. Kadarmideen H.N. (2008). Biochemical, ECF18R, and RYR1 Gene Polymorphisms and Their Associations with Osteochondral Diseases and Production Traits in Pigs. Biochemical Genetics 46: 41-53.
  58. De Haas Y., Janss, L.L.G., Kadarmideen H.N. (2007). Genetic correlations between body condition scores and fertility in dairy cattle using bivariate random regression models. Journal of Animal Breeding Genetics 124: 277-285.
  59. Kadarmideen H.N. and Reverter, A. (2007). Combined Genetic, Genomic and Transcriptomic Methods in the Analysis of Animal Traits. CABI Review: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 2: No. 042, 16 pp.
  60. Von Rohr, P. Friberg, M., Kadarmideen, H.N., (2007). Prediction of transcription factor binding sites using genetical genomics methods. Journal of Bioinformatics and Computational Biology 5: 773-793.
  61. Kadarmideen, H.N. and Janss, L.L.G. (2007). Population and systems genetics analyses of cortisol in pigs divergently selected for stress. Physiological Genomics 29: 57-65.
  62. Karacaören, B., Kadarmideen, H.N. and L.L.G. Janss (2006). Investigation of Major Gene for Milk Yield, Milking Speed, Dry Matter Intake, and Body Weight in Dairy Cattle. Journal of Applied Genetics 47: 337-343.
  63. Kadarmideen, H.N., Li, Y. and Janss, L.L.G. (2006). Gene-environment interactions in complex diseases: genetic models and methods for QTL mapping in multiple half-sib populations. Genetical Research 88: 119-131.
  64. Kadarmideen HN, von Rohr P and Janss LL. (2006) From genetical genomics to systems genetics: potential applications in quantitative genomics and animal breeding. Mammalian Genome 17: 548-64.
  65. De Haas Y., Janss, L.L.G. and Kadarmideen H.N. (2007). Genetic and phenotypic parameters for conformation and yield traits in three Swiss dairy cattle breeds. Journal of Animal Breeding Genetics 124: 12-19
  66. Karacaören, B., Jaffrézic, F. and Kadarmideen, H.N. (2006). Genetic Parameters for Functional Traits in Dairy Cattle from Daily Random Regression Models. Journal of Dairy Science 89: 791-798
  67. Kadarmideen HN, Janss LL. (2005). Evidence of a major gene from Bayesian segregation analyses of liability to osteochondral diseases in pigs. Genetics 171: 1195-206.
  68. Neuenschwander, T., Kadarmideen, H.N., Wegmann, S., and Y. de Haas. (2005). Genetics of parity-dependent production increase and its relationship with health, fertility, longevity, and conformation in Swiss Holsteins. Journal of Dairy Science 88: 1540-1551.
  69. Kadarmideen, H.N. (2005). Multi-Variate Genetic Evaluations of Body Condition and Milk Production in Dairy Cows. Journal of Animal and Veterinary Advances 4: 478-483.
  70. Kadarmideen, H.N. and Ilahi, H. (2005). Complex segregation analysis of categorical traits in farm animals: comparison of linear and threshold models. Asian-Australasian Journal of Animal Sciences 18: 1088-1097.
  71. Kadarmideen, H.N. and Janss, L.L.G. (2005). Evidence of Major Gene for Osteochondral Disease in Pigs from a Bayesian Segregation Analysis. Genetics 171: 1195-206.
  72. Kadarmideen, H.N., Schwörer, D., Ilahi, H., Malek, M., Hofer, A. (2004). Genetics of osteochondral disease and its relationship with meat quality and quantity, growth, and feed conversion traits in pigs. Journal of Animal Science 82:3118-27.
  73. Kadarmideen, H.N. (2004). Genetic correlations among body condition score, somatic cell score, milk production, fertility and conformation traits in dairy cows. Animal Science 79:191-201.
  74. Hagger, C., Janss, L.L.G., Kadarmideen, H.N., Stranzinger, G. (2004). Bayesian inference on major loci in related multigeneration selection lines of laying hens. Poultry Science 83:1932-1939.
  75. Genini, S. Malek, M., Špilar, S., Nguyen, T.T., Ménétrey, F., Gebert, S., Hagger, C., Neuenschwander, S., Kadarmideen, H.N., Stranzinger, G., Vögeli. P. (2004). Arthrogryposis Multiplex Congenita (AMC), a hereditary disease in swine, maps to chromosome 5 by linkage analysis. Mammalian Genome 15: 935-941.
  76. Ilahi,H. and Kadarmideen, H.N. (2004). Bayesian Segregation Analysis of Milk Flow in Swiss Dairy Cattle using Gibbs Sampling. Genetics Selection Evolution 36: 563-576.
  77. Schneeberger, M. Hagger, C, Kadarmideen, H.N., Leuenberger, H., Malek, M., Scheeder,M., Wengi, A., and Stranzinger, G. (2004). Genetics of production traits and appearance in multi-way crossbred Swiss sheep population: preliminary results. Archives in Animal Breeding (special issue) 47: 56-63.
  78. Kadarmideen, H. N., Wegmann S., (2003). Genetic Parameters for Body Condition Score and its Relationship with Type and Production Traits in Swiss Holsteins. Journal of Dairy Science 86:3685-93.
  79. Kadarmideen, H. N., Thompson, R., Coffey, M.P. and Kossaibati , M.A., (2003). Genetic parameters and evaluations from single- and multiple-trait analysis of dairy cow fertility and milk production. Livestock Production Science 81:183-195.
  80. Kadarmideen, H. N., Rekaya, R., Gianola, D., (2001). Genetic parameters for clinical mastitis in Holstein-Friesians: a Bayesian analysis. Animal Science 73: 229-240.
  81. Kadarmideen, H. N., Pryce, J.E., (2001). Genetic and economic relationships between somatic cell count and clinical mastitis and their use in selection for mastitis resistance in dairy cattle. Animal Science 73: 19-28.
  82. Kadarmideen, H. N., Dekkers, J.C.M., (2001). Generalized marker regression and interval QTL mapping methods for binary traits in half-sib family designs. Journal of Animal Breeding and Genetics 118: 297-309.
  83. Kadarmideen, H. N., Thompson, R., Simm, G., (2000). Linear and Threshold Model Genetic Parameters for Disease, Fertility and Milk Production in dairy cattle. Animal Science 71: 411–419.
  84. Kadarmideen, H. N., Janss, L.L.G., Dekkers, J.C.M., (2000). Power of Quantitative Trait Locus mapping for polygenic binary traits using generalized and regression interval mapping in Multi-family Half-sib designs. Genetical Research 76: 305-317.
  85. Simm G, Oldham JD, Coffey MP, Pryce JE, Kadarmideen HN (2000). Future dairy cattle breeding strategies. Cattle Practice (British Cattle Veterinary Association official journal) 8: 391-400
  86. Kadarmideen, H. N., Dekkers, J.C.M. (1999). Regression on markers with uncertain allele transmission for QTL mapping in half-sib designs. Genetics Selection Evolution 31: 437-455.
  87. Kadarmideen, H.N., Krishnan, A.R. and Edwin, M.J. (1995). Association between transferrin polymorphism and production traits in Rabbits. Indian Journal of Animal Sciences 65 (10): 1159-1160.
  88. Kumarasamy, P., Kadarmideen, H.N., Thangaraju,P and Krishnan, A.R. (1992). Sex chromatin screening for identifying reproductive inefficiency in dairy animals. Indian Journal of Animal Physiology 1(1): 33-34.